noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.6.1.2.5) Plots of Abundance.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.6.1.2.5.2) Iterating over all combinations of grouping variables

(1.6.1.2.5.2.1) Grouping variables visit,Drug.Before.Diet

(1.6.1.2.5.2.2) Iterating over Abundance. profile sorting order

(1.6.1.2.5.2.2.1) Abundance. profile sorting order: average abundance

(1.6.1.2.5.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.6.1.2.5.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling

(1.6.1.2.5.2.2.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.2.5.2.2.2.1.1.0) Table 355. Data table used for plots. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.2.5.2.2.2.1.1.0-32336bf1689.1.6.1.2.5.2.2.2.1.1.csv

(1.6.1.2.5.2.2.2.1.1.1) Widget 372. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.2.5.2.2.2.1.1.1-3232d4e686bDynamic.Pivot.Table.html

(1.6.1.2.5.2.2.2.1.1.1) Widget 373. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.2.5.2.2.2.1.1.1-32367884a19Dynamic.Pivot.Table.html

(1.6.1.2.5.2.2.2.1.1.1) Table 356. Summary table. Data grouped by visit,Drug.Before.Diet. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.2.5.2.2.2.1.1.1-32327144bd9.1.6.1.2.5.2.2.2.1.1.csv

(1.6.1.2.5.2.2.2.1.1.1) Figure 948. Abundance. Data grouped by visit,Drug.Before.Diet. bar_stacked plot. Image file: plots/3234539f282.svg.

(1.6.1.2.5.2.2.2.1.1.1) Figure 949. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/323502183c2.svg.

(1.6.1.2.5.2.2.2.1.1.1) Figure 950. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/323e88ca43.svg.

(1.6.1.2.5.2.2.2.1.1.1) Figure 951. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/3232fb84f9d.svg.

(1.6.1.2.5.2.2.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.2.5.2.2.2.1.2.1) Figure 952. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/32333806823.svg.

(1.6.1.2.5.2.2.2.1.2.1) Figure 953. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/32364fdd7d4.svg.

(1.6.1.2.5.2.2.2.1.2.1) Figure 954. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32390e9ad0.svg.

(1.6.1.2.5.2.2.2.2) dodged plots. Iterating over orientation and, optionally, scaling

(1.6.1.2.5.2.2.2.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.2.5.2.2.2.2.1.1) Figure 955. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/323b08828a.svg.

(1.6.1.2.5.2.2.2.2.1.1) Figure 956. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/32370c4bb37.svg.

(1.6.1.2.5.2.2.2.2.1.1) Figure 957. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/323402dd80b.svg.

(1.6.1.2.5.2.2.2.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.2.5.2.2.2.2.2.1) Figure 958. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/32313a43358.svg.

(1.6.1.2.5.2.2.2.2.2.1) Figure 959. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/3236c4287a6.svg.

(1.6.1.2.5.2.2.2.2.2.1) Figure 960. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32356bb69b6.svg.

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