noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.6.1.2.5) Plots of Abundance.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.6.1.2.5.2) Iterating over all combinations of grouping variables
(1.6.1.2.5.2.1) Grouping variables visit,Drug.Before.Diet
(1.6.1.2.5.2.2) Iterating over Abundance. profile sorting order
(1.6.1.2.5.2.2.1) Abundance. profile sorting order: average abundance
(1.6.1.2.5.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.6.1.2.5.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.6.1.2.5.2.2.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.2.5.2.2.2.1.1.0) Table 355. Data table used for plots. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.2.5.2.2.2.1.1.0-32336bf1689.1.6.1.2.5.2.2.2.1.1.csv

.record.id visit Drug.Before.Diet feature Abundance
SM1 1 DrugBefore_YES Bacteroidales 7.837e-01
SM10 3 DrugBefore_YES Bacteroidales 2.396e-01
SM100 4 DrugBefore_YES Bacteroidales 5.483e-01
SM11 2 DrugBefore_YES Bacteroidales 9.084e-01
SM12 1 DrugBefore_YES Bacteroidales 9.279e-01
SM13 1 DrugBefore_NO Bacteroidales 7.549e-01
SM14 1 DrugBefore_NO Bacteroidales 6.361e-02
SM16 4 DrugBefore_NO Bacteroidales 3.910e-01
SM17 1 DrugBefore_YES Bacteroidales 8.184e-01
SM18 2 DrugBefore_NO Bacteroidales 7.195e-01
SM19 2 DrugBefore_NO Bacteroidales 2.254e-01
SM2 1 DrugBefore_NO Bacteroidales 8.870e-01
SM21 1 DrugBefore_NO Bacteroidales 5.680e-01
SM22 1 DrugBefore_YES Bacteroidales 6.107e-01
SM23 2 DrugBefore_YES Bacteroidales 2.816e-01
SM24 1 DrugBefore_NO Bacteroidales 8.665e-01
SM25 4 DrugBefore_NO Bacteroidales 4.540e-01
SM29 3 DrugBefore_YES Bacteroidales 9.319e-01
SM3 2 DrugBefore_YES Bacteroidales 3.066e-01
SM30 4 DrugBefore_YES Bacteroidales 6.906e-02
SM33 1 DrugBefore_YES Bacteroidales 6.904e-01
SM36 4 DrugBefore_NO Bacteroidales 3.219e-04
SM38 2 DrugBefore_YES Bacteroidales 9.845e-01
SM39 1 DrugBefore_NO Bacteroidales 9.342e-01
SM40 4 DrugBefore_NO Bacteroidales 7.285e-01
SM41 1 DrugBefore_YES Bacteroidales 5.559e-01
SM42 4 DrugBefore_NO Bacteroidales 7.114e-01
SM43 4 DrugBefore_YES Bacteroidales 7.229e-01
SM45 2 DrugBefore_NO Bacteroidales 0.000e+00
SM49 1 DrugBefore_YES Bacteroidales 9.322e-01
SM5 3 DrugBefore_YES Bacteroidales 8.376e-01
SM50 3 DrugBefore_NO Bacteroidales 0.000e+00
SM51 4 DrugBefore_YES Bacteroidales 7.147e-01
SM52 1 DrugBefore_NO Bacteroidales 9.827e-02
SM53 2 DrugBefore_YES Bacteroidales 8.029e-01
SM54 3 DrugBefore_YES Bacteroidales 8.090e-01
SM56 2 DrugBefore_YES Bacteroidales 7.317e-01
SM57 1 DrugBefore_YES Bacteroidales 9.046e-01
SM58 2 DrugBefore_NO Bacteroidales 7.692e-01
SM59 3 DrugBefore_NO Bacteroidales 5.768e-02
SM60 3 DrugBefore_YES Bacteroidales 8.475e-01
SM62 1 DrugBefore_YES Bacteroidales 9.715e-01
SM64 2 DrugBefore_YES Bacteroidales 8.683e-01
SM65 3 DrugBefore_YES Bacteroidales 3.741e-01
SM67 4 DrugBefore_YES Bacteroidales 9.138e-01
SM68 4 DrugBefore_NO Bacteroidales 1.705e-01
SM69 4 DrugBefore_YES Bacteroidales 8.374e-01
SM71 3 DrugBefore_YES Bacteroidales 9.175e-01
SM73 1 DrugBefore_NO Bacteroidales 8.563e-01
SM75 3 DrugBefore_NO Bacteroidales 2.377e-03
SM77 2 DrugBefore_YES Bacteroidales 7.635e-01
SM79 2 DrugBefore_NO Bacteroidales 8.495e-01
SM8 1 DrugBefore_NO Bacteroidales 8.250e-01
SM82 4 DrugBefore_YES Bacteroidales 9.555e-01
SM83 1 DrugBefore_YES Bacteroidales 8.254e-01
SM84 1 DrugBefore_YES Bacteroidales 8.858e-01
SM86 2 DrugBefore_YES Bacteroidales 2.792e-03
SM87 1 DrugBefore_YES Bacteroidales 8.668e-01
SM88 2 DrugBefore_YES Bacteroidales 8.385e-01
SM9 2 DrugBefore_NO Bacteroidales 6.635e-01
SM90 2 DrugBefore_NO Bacteroidales 6.176e-01
SM91 3 DrugBefore_YES Bacteroidales 7.223e-01
SM92 3 DrugBefore_NO Bacteroidales 8.864e-01
SM93 1 DrugBefore_YES Bacteroidales 7.781e-01
SM96 1 DrugBefore_NO Bacteroidales 6.376e-01
SM98 3 DrugBefore_NO Bacteroidales 8.378e-01
SM99 3 DrugBefore_NO Bacteroidales 6.951e-01
SM1 1 DrugBefore_YES Clostridiales 1.709e-01
SM10 3 DrugBefore_YES Clostridiales 7.097e-01
SM100 4 DrugBefore_YES Clostridiales 4.044e-01
SM11 2 DrugBefore_YES Clostridiales 6.923e-02
SM12 1 DrugBefore_YES Clostridiales 6.299e-02
SM13 1 DrugBefore_NO Clostridiales 1.670e-01
SM14 1 DrugBefore_NO Clostridiales 3.018e-01
SM16 4 DrugBefore_NO Clostridiales 5.717e-01
SM17 1 DrugBefore_YES Clostridiales 1.038e-01
SM18 2 DrugBefore_NO Clostridiales 9.552e-02
SM19 2 DrugBefore_NO Clostridiales 7.154e-01
SM2 1 DrugBefore_NO Clostridiales 2.821e-02
SM21 1 DrugBefore_NO Clostridiales 3.925e-01
SM22 1 DrugBefore_YES Clostridiales 2.891e-01
SM23 2 DrugBefore_YES Clostridiales 1.659e-03
SM24 1 DrugBefore_NO Clostridiales 8.129e-02
SM25 4 DrugBefore_NO Clostridiales 5.006e-01
SM29 3 DrugBefore_YES Clostridiales 5.931e-02
SM3 2 DrugBefore_YES Clostridiales 6.225e-01
SM30 4 DrugBefore_YES Clostridiales 6.076e-01
SM33 1 DrugBefore_YES Clostridiales 4.996e-02
SM36 4 DrugBefore_NO Clostridiales 7.193e-01
SM38 2 DrugBefore_YES Clostridiales 1.115e-02
SM39 1 DrugBefore_NO Clostridiales 4.334e-02
SM40 4 DrugBefore_NO Clostridiales 1.535e-01
SM41 1 DrugBefore_YES Clostridiales 1.723e-01
SM42 4 DrugBefore_NO Clostridiales 2.559e-01
SM43 4 DrugBefore_YES Clostridiales 1.955e-01
SM45 2 DrugBefore_NO Clostridiales 0.000e+00
SM49 1 DrugBefore_YES Clostridiales 5.216e-02
SM5 3 DrugBefore_YES Clostridiales 9.120e-02
SM50 3 DrugBefore_NO Clostridiales 7.065e-01
SM51 4 DrugBefore_YES Clostridiales 1.970e-01
SM52 1 DrugBefore_NO Clostridiales 6.445e-01
SM53 2 DrugBefore_YES Clostridiales 1.491e-01
SM54 3 DrugBefore_YES Clostridiales 1.726e-01
SM56 2 DrugBefore_YES Clostridiales 2.125e-01
SM57 1 DrugBefore_YES Clostridiales 8.819e-02
SM58 2 DrugBefore_NO Clostridiales 1.200e-01
SM59 3 DrugBefore_NO Clostridiales 7.978e-01
SM60 3 DrugBefore_YES Clostridiales 6.399e-02
SM62 1 DrugBefore_YES Clostridiales 2.529e-02
SM64 2 DrugBefore_YES Clostridiales 7.026e-02
SM65 3 DrugBefore_YES Clostridiales 5.640e-01
SM67 4 DrugBefore_YES Clostridiales 7.164e-02
SM68 4 DrugBefore_NO Clostridiales 5.874e-01
SM69 4 DrugBefore_YES Clostridiales 1.229e-01
SM71 3 DrugBefore_YES Clostridiales 5.366e-02
SM73 1 DrugBefore_NO Clostridiales 9.994e-02
SM75 3 DrugBefore_NO Clostridiales 8.122e-01
SM77 2 DrugBefore_YES Clostridiales 1.921e-01
SM79 2 DrugBefore_NO Clostridiales 1.412e-01
SM8 1 DrugBefore_NO Clostridiales 1.294e-01
SM82 4 DrugBefore_YES Clostridiales 2.914e-02
SM83 1 DrugBefore_YES Clostridiales 1.565e-01
SM84 1 DrugBefore_YES Clostridiales 5.785e-02
SM86 2 DrugBefore_YES Clostridiales 8.889e-01
SM87 1 DrugBefore_YES Clostridiales 7.040e-02
SM88 2 DrugBefore_YES Clostridiales 1.247e-01
SM9 2 DrugBefore_NO Clostridiales 7.939e-02
SM90 2 DrugBefore_NO Clostridiales 2.991e-01
SM91 3 DrugBefore_YES Clostridiales 2.006e-01
SM92 3 DrugBefore_NO Clostridiales 8.090e-02
SM93 1 DrugBefore_YES Clostridiales 1.938e-01
SM96 1 DrugBefore_NO Clostridiales 2.363e-01
SM98 3 DrugBefore_NO Clostridiales 5.983e-02
SM99 3 DrugBefore_NO Clostridiales 2.487e-01
SM1 1 DrugBefore_YES Lactobacillales 4.329e-04
SM10 3 DrugBefore_YES Lactobacillales 4.240e-04
SM100 4 DrugBefore_YES Lactobacillales 3.077e-04
SM11 2 DrugBefore_YES Lactobacillales 6.567e-04
SM12 1 DrugBefore_YES Lactobacillales 8.853e-05
SM13 1 DrugBefore_NO Lactobacillales 0.000e+00
SM14 1 DrugBefore_NO Lactobacillales 1.905e-01
SM16 4 DrugBefore_NO Lactobacillales 4.875e-03
SM17 1 DrugBefore_YES Lactobacillales 1.241e-03
SM18 2 DrugBefore_NO Lactobacillales 1.242e-02
SM19 2 DrugBefore_NO Lactobacillales 1.388e-03
SM2 1 DrugBefore_NO Lactobacillales 7.278e-02
SM21 1 DrugBefore_NO Lactobacillales 2.690e-03
SM22 1 DrugBefore_YES Lactobacillales 3.071e-03
SM23 2 DrugBefore_YES Lactobacillales 7.105e-01
SM24 1 DrugBefore_NO Lactobacillales 6.431e-04
SM25 4 DrugBefore_NO Lactobacillales 7.765e-03
SM29 3 DrugBefore_YES Lactobacillales 0.000e+00
SM3 2 DrugBefore_YES Lactobacillales 8.146e-03
SM30 4 DrugBefore_YES Lactobacillales 7.637e-03
SM33 1 DrugBefore_YES Lactobacillales 7.868e-04
SM36 4 DrugBefore_NO Lactobacillales 6.437e-04
SM38 2 DrugBefore_YES Lactobacillales 3.545e-03
SM39 1 DrugBefore_NO Lactobacillales 1.821e-04
SM40 4 DrugBefore_NO Lactobacillales 4.625e-04
SM41 1 DrugBefore_YES Lactobacillales 4.831e-03
SM42 4 DrugBefore_NO Lactobacillales 2.497e-04
SM43 4 DrugBefore_YES Lactobacillales 2.981e-04
SM45 2 DrugBefore_NO Lactobacillales 9.998e-01
SM49 1 DrugBefore_YES Lactobacillales 3.316e-03
SM5 3 DrugBefore_YES Lactobacillales 9.324e-04
SM50 3 DrugBefore_NO Lactobacillales 1.578e-03
SM51 4 DrugBefore_YES Lactobacillales 4.461e-04
SM52 1 DrugBefore_NO Lactobacillales 2.321e-02
SM53 2 DrugBefore_YES Lactobacillales 7.192e-05
SM54 3 DrugBefore_YES Lactobacillales 0.000e+00
SM56 2 DrugBefore_YES Lactobacillales 0.000e+00
SM57 1 DrugBefore_YES Lactobacillales 0.000e+00
SM58 2 DrugBefore_NO Lactobacillales 3.563e-03
SM59 3 DrugBefore_NO Lactobacillales 8.989e-03
SM60 3 DrugBefore_YES Lactobacillales 3.404e-04
SM62 1 DrugBefore_YES Lactobacillales 1.606e-03
SM64 2 DrugBefore_YES Lactobacillales 5.011e-04
SM65 3 DrugBefore_YES Lactobacillales 9.617e-04
SM67 4 DrugBefore_YES Lactobacillales 5.882e-05
SM68 4 DrugBefore_NO Lactobacillales 1.153e-02
SM69 4 DrugBefore_YES Lactobacillales 1.554e-04
SM71 3 DrugBefore_YES Lactobacillales 1.253e-03
SM73 1 DrugBefore_NO Lactobacillales 1.514e-04
SM75 3 DrugBefore_NO Lactobacillales 6.655e-02
SM77 2 DrugBefore_YES Lactobacillales 2.816e-04
SM79 2 DrugBefore_NO Lactobacillales 8.808e-04
SM8 1 DrugBefore_NO Lactobacillales 1.483e-03
SM82 4 DrugBefore_YES Lactobacillales 2.293e-03
SM83 1 DrugBefore_YES Lactobacillales 0.000e+00
SM84 1 DrugBefore_YES Lactobacillales 9.707e-05
SM86 2 DrugBefore_YES Lactobacillales 8.067e-03
SM87 1 DrugBefore_YES Lactobacillales 3.805e-04
SM88 2 DrugBefore_YES Lactobacillales 8.525e-05
SM9 2 DrugBefore_NO Lactobacillales 1.645e-03
SM90 2 DrugBefore_NO Lactobacillales 4.125e-04
SM91 3 DrugBefore_YES Lactobacillales 1.401e-03
SM92 3 DrugBefore_NO Lactobacillales 0.000e+00
SM93 1 DrugBefore_YES Lactobacillales 1.345e-04
SM96 1 DrugBefore_NO Lactobacillales 1.443e-03
SM98 3 DrugBefore_NO Lactobacillales 5.408e-04

(1.6.1.2.5.2.2.2.1.1.1) Widget 372. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.2.5.2.2.2.1.1.1-3232d4e686bDynamic.Pivot.Table.html

(1.6.1.2.5.2.2.2.1.1.1) Widget 373. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.2.5.2.2.2.1.1.1-32367884a19Dynamic.Pivot.Table.html

(1.6.1.2.5.2.2.2.1.1.1) Table 356. Summary table. Data grouped by visit,Drug.Before.Diet. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.2.5.2.2.2.1.1.1-32327144bd9.1.6.1.2.5.2.2.2.1.1.csv

feature visit Drug.Before.Diet mean sd median incidence
Bacteroidales 1 DrugBefore_NO 6.491e-01 3.203e-01 7.900e-01 1.0000
Bacteroidales 1 DrugBefore_YES 8.116e-01 1.270e-01 8.254e-01 1.0000
Bacteroidales 2 DrugBefore_NO 5.492e-01 3.141e-01 6.635e-01 0.8571
Bacteroidales 2 DrugBefore_YES 6.489e-01 3.295e-01 7.832e-01 1.0000
Bacteroidales 3 DrugBefore_NO 4.132e-01 4.358e-01 3.764e-01 0.8333
Bacteroidales 3 DrugBefore_YES 7.099e-01 2.596e-01 8.233e-01 1.0000
Bacteroidales 4 DrugBefore_NO 4.093e-01 2.898e-01 4.225e-01 1.0000
Bacteroidales 4 DrugBefore_YES 6.803e-01 3.025e-01 7.229e-01 1.0000
Clostridiales 1 DrugBefore_NO 2.124e-01 1.912e-01 1.482e-01 1.0000
Clostridiales 1 DrugBefore_YES 1.149e-01 7.620e-02 8.819e-02 1.0000
Clostridiales 2 DrugBefore_NO 2.072e-01 2.417e-01 1.200e-01 0.8571
Clostridiales 2 DrugBefore_YES 2.342e-01 2.904e-01 1.369e-01 1.0000
Clostridiales 3 DrugBefore_NO 4.510e-01 3.597e-01 4.776e-01 1.0000
Clostridiales 3 DrugBefore_YES 2.394e-01 2.542e-01 1.319e-01 1.0000
Clostridiales 4 DrugBefore_NO 4.647e-01 2.159e-01 5.361e-01 1.0000
Clostridiales 4 DrugBefore_YES 2.326e-01 2.050e-01 1.955e-01 1.0000
Lactobacillales 1 DrugBefore_NO 2.930e-02 6.104e-02 1.463e-03 0.9000
Lactobacillales 1 DrugBefore_YES 1.230e-03 1.560e-03 4.329e-04 0.8462
Lactobacillales 2 DrugBefore_NO 1.457e-01 3.766e-01 1.645e-03 1.0000
Lactobacillales 2 DrugBefore_YES 7.318e-02 2.240e-01 5.789e-04 0.9000
Lactobacillales 3 DrugBefore_NO 1.300e-02 2.645e-02 1.059e-03 0.8333
Lactobacillales 3 DrugBefore_YES 6.641e-04 5.471e-04 6.782e-04 0.7500
Lactobacillales 4 DrugBefore_NO 4.254e-03 4.671e-03 2.759e-03 1.0000
Lactobacillales 4 DrugBefore_YES 1.600e-03 2.772e-03 3.077e-04 1.0000
Erysipelotrichales 1 DrugBefore_NO 4.869e-02 1.198e-01 9.058e-03 1.0000
Erysipelotrichales 1 DrugBefore_YES 9.306e-03 8.918e-03 8.445e-03 0.8462
Erysipelotrichales 2 DrugBefore_NO 4.388e-03 6.426e-03 9.718e-04 0.7143
Erysipelotrichales 2 DrugBefore_YES 6.841e-03 9.988e-03 3.901e-03 1.0000
Erysipelotrichales 3 DrugBefore_NO 3.388e-02 3.662e-02 2.731e-02 1.0000
Erysipelotrichales 3 DrugBefore_YES 7.867e-03 1.024e-02 5.726e-03 1.0000
Erysipelotrichales 4 DrugBefore_NO 5.830e-02 9.802e-02 5.452e-03 1.0000
Erysipelotrichales 4 DrugBefore_YES 6.194e-03 4.422e-03 4.538e-03 1.0000
Selenomonadales 1 DrugBefore_NO 3.888e-03 6.406e-03 1.009e-03 0.9000
Selenomonadales 1 DrugBefore_YES 7.876e-03 1.648e-02 1.992e-03 0.9231
Selenomonadales 2 DrugBefore_NO 5.700e-02 8.202e-02 6.478e-03 0.8571
Selenomonadales 2 DrugBefore_YES 1.201e-02 2.200e-02 2.560e-03 0.7000
Selenomonadales 3 DrugBefore_NO 2.475e-02 3.301e-02 1.083e-02 0.8333
Selenomonadales 3 DrugBefore_YES 5.929e-03 6.142e-03 4.186e-03 0.7500
Selenomonadales 4 DrugBefore_NO 1.034e-02 9.712e-03 9.060e-03 1.0000
Selenomonadales 4 DrugBefore_YES 5.040e-03 6.779e-03 2.231e-04 0.8571
Enterobacteriales 1 DrugBefore_NO 1.535e-02 4.600e-02 1.286e-04 0.5000
Enterobacteriales 1 DrugBefore_YES 1.960e-02 6.575e-02 0.000e+00 0.4615
Enterobacteriales 2 DrugBefore_NO 2.289e-03 5.219e-03 4.125e-04 0.7143
Enterobacteriales 2 DrugBefore_YES 2.773e-03 6.325e-03 1.966e-04 0.6000
Enterobacteriales 3 DrugBefore_NO 1.166e-02 2.268e-02 3.416e-03 0.8333
Enterobacteriales 3 DrugBefore_YES 2.961e-03 7.095e-03 3.210e-04 0.6250
Enterobacteriales 4 DrugBefore_NO 2.257e-03 3.183e-03 4.479e-04 0.6667
Enterobacteriales 4 DrugBefore_YES 2.872e-02 3.464e-02 1.756e-02 0.7143
Burkholderiales 1 DrugBefore_NO 8.138e-03 1.165e-02 2.577e-03 1.0000
Burkholderiales 1 DrugBefore_YES 9.798e-03 1.692e-02 1.809e-03 0.6154
Burkholderiales 2 DrugBefore_NO 1.182e-02 1.576e-02 6.155e-03 0.5714
Burkholderiales 2 DrugBefore_YES 1.217e-02 1.922e-02 0.000e+00 0.4000
Burkholderiales 3 DrugBefore_NO 1.331e-03 3.080e-03 0.000e+00 0.3333
Burkholderiales 3 DrugBefore_YES 8.794e-03 1.629e-02 0.000e+00 0.2500
Burkholderiales 4 DrugBefore_NO 1.559e-02 3.336e-02 3.219e-04 0.5000
Burkholderiales 4 DrugBefore_YES 6.077e-03 1.459e-02 0.000e+00 0.4286
Pasteurellales 1 DrugBefore_NO 1.112e-03 2.563e-03 0.000e+00 0.4000
Pasteurellales 1 DrugBefore_YES 1.341e-04 2.383e-04 0.000e+00 0.3077
Pasteurellales 2 DrugBefore_NO 2.033e-03 2.334e-03 1.650e-03 0.8571
Pasteurellales 2 DrugBefore_YES 8.641e-04 1.785e-03 4.263e-05 0.5000
Pasteurellales 3 DrugBefore_NO 1.210e-02 2.139e-02 0.000e+00 0.3333
Pasteurellales 3 DrugBefore_YES 3.303e-03 4.806e-03 1.166e-03 0.6250
Pasteurellales 4 DrugBefore_NO 1.837e-02 3.979e-02 1.708e-03 0.8333
Pasteurellales 4 DrugBefore_YES 2.506e-02 6.562e-02 2.231e-04 0.7143
Unclassified_Bacteria 1 DrugBefore_NO 1.480e-02 2.717e-02 4.448e-03 1.0000
Unclassified_Bacteria 1 DrugBefore_YES 3.807e-03 4.164e-03 2.257e-03 0.9231
Unclassified_Bacteria 2 DrugBefore_NO 2.186e-03 2.207e-03 1.388e-03 0.8571
Unclassified_Bacteria 2 DrugBefore_YES 2.145e-03 1.812e-03 2.054e-03 0.9000
Unclassified_Bacteria 3 DrugBefore_NO 5.270e-03 3.824e-03 3.444e-03 1.0000
Unclassified_Bacteria 3 DrugBefore_YES 1.982e-03 1.537e-03 1.345e-03 1.0000
Unclassified_Bacteria 4 DrugBefore_NO 4.114e-03 4.251e-03 2.007e-03 1.0000
Unclassified_Bacteria 4 DrugBefore_YES 5.219e-03 8.370e-03 1.399e-03 1.0000
Unclassified_Firmicutes 1 DrugBefore_NO 2.802e-03 4.001e-03 1.172e-03 1.0000
Unclassified_Firmicutes 1 DrugBefore_YES 2.142e-03 2.989e-03 6.030e-04 0.7692
Unclassified_Firmicutes 2 DrugBefore_NO 1.103e-02 1.266e-02 7.867e-03 0.7143
Unclassified_Firmicutes 2 DrugBefore_YES 1.606e-03 2.074e-03 5.869e-04 0.8000
Unclassified_Firmicutes 3 DrugBefore_NO 1.975e-02 2.478e-02 1.006e-02 1.0000
Unclassified_Firmicutes 3 DrugBefore_YES 1.509e-03 1.271e-03 1.063e-03 1.0000
Unclassified_Firmicutes 4 DrugBefore_NO 7.886e-03 8.479e-03 4.579e-03 1.0000
Unclassified_Firmicutes 4 DrugBefore_YES 9.570e-04 1.257e-03 6.692e-04 0.8571
Verrucomicrobiales 1 DrugBefore_NO 6.661e-03 1.204e-02 0.000e+00 0.4000
Verrucomicrobiales 1 DrugBefore_YES 1.355e-02 4.857e-02 0.000e+00 0.3077
Verrucomicrobiales 2 DrugBefore_NO 4.125e-04 1.091e-03 0.000e+00 0.1429
Verrucomicrobiales 2 DrugBefore_YES 3.747e-04 1.185e-03 0.000e+00 0.1000
Verrucomicrobiales 3 DrugBefore_NO 1.873e-04 4.587e-04 0.000e+00 0.1667
Verrucomicrobiales 3 DrugBefore_YES 8.617e-04 2.437e-03 0.000e+00 0.1250
Verrucomicrobiales 4 DrugBefore_NO 6.167e-05 1.510e-04 0.000e+00 0.1667
Verrucomicrobiales 4 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Bifidobacteriales 1 DrugBefore_NO 1.552e-03 3.211e-03 1.985e-04 0.7000
Bifidobacteriales 1 DrugBefore_YES 1.974e-03 5.715e-03 3.015e-04 0.6154
Bifidobacteriales 2 DrugBefore_NO 3.356e-04 6.091e-04 0.000e+00 0.4286
Bifidobacteriales 2 DrugBefore_YES 1.000e-03 2.405e-03 1.473e-04 0.7000
Bifidobacteriales 3 DrugBefore_NO 1.383e-03 3.177e-03 9.832e-05 0.5000
Bifidobacteriales 3 DrugBefore_YES 5.377e-03 8.782e-03 9.066e-04 0.6250
Bifidobacteriales 4 DrugBefore_NO 1.767e-03 3.919e-03 9.250e-05 0.5000
Bifidobacteriales 4 DrugBefore_YES 3.710e-03 6.004e-03 5.198e-04 0.7143
Rhizobiales 1 DrugBefore_NO 1.645e-03 2.271e-03 7.732e-04 0.6000
Rhizobiales 1 DrugBefore_YES 1.928e-03 3.638e-03 1.941e-04 0.5385
Rhizobiales 2 DrugBefore_NO 2.085e-03 4.800e-03 3.915e-04 0.7143
Rhizobiales 2 DrugBefore_YES 3.214e-03 5.669e-03 2.445e-04 0.6000
Rhizobiales 3 DrugBefore_NO 1.387e-04 3.398e-04 0.000e+00 0.1667
Rhizobiales 3 DrugBefore_YES 1.023e-03 2.663e-03 0.000e+00 0.2500
Rhizobiales 4 DrugBefore_NO 8.545e-04 1.534e-03 1.558e-04 0.5000
Rhizobiales 4 DrugBefore_YES 1.675e-03 4.194e-03 0.000e+00 0.4286
Fusobacteriales 1 DrugBefore_NO 3.652e-04 9.889e-04 0.000e+00 0.3000
Fusobacteriales 1 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Fusobacteriales 2 DrugBefore_NO 5.194e-05 8.907e-05 0.000e+00 0.2857
Fusobacteriales 2 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Fusobacteriales 3 DrugBefore_NO 4.375e-03 9.032e-03 0.000e+00 0.3333
Fusobacteriales 3 DrugBefore_YES 8.885e-03 2.447e-02 0.000e+00 0.2500
Fusobacteriales 4 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Fusobacteriales 4 DrugBefore_YES 2.007e-04 4.855e-04 0.000e+00 0.4286

(1.6.1.2.5.2.2.2.1.1.1) Figure 948. Abundance. Data grouped by visit,Drug.Before.Diet. bar_stacked plot. Image file: plots/3234539f282.svg.

(1.6.1.2.5.2.2.2.1.1.1) Figure 949. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/323502183c2.svg.

(1.6.1.2.5.2.2.2.1.1.1) Figure 950. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/323e88ca43.svg.

(1.6.1.2.5.2.2.2.1.1.1) Figure 951. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/3232fb84f9d.svg.

(1.6.1.2.5.2.2.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.2.5.2.2.2.1.2.1) Figure 952. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/32333806823.svg.

(1.6.1.2.5.2.2.2.1.2.1) Figure 953. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/32364fdd7d4.svg.

(1.6.1.2.5.2.2.2.1.2.1) Figure 954. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32390e9ad0.svg.

(1.6.1.2.5.2.2.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.6.1.2.5.2.2.2.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.2.5.2.2.2.2.1.1) Figure 955. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/323b08828a.svg.

(1.6.1.2.5.2.2.2.2.1.1) Figure 956. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/32370c4bb37.svg.

(1.6.1.2.5.2.2.2.2.1.1) Figure 957. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/323402dd80b.svg.

(1.6.1.2.5.2.2.2.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.2.5.2.2.2.2.2.1) Figure 958. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/32313a43358.svg.

(1.6.1.2.5.2.2.2.2.2.1) Figure 959. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/3236c4287a6.svg.

(1.6.1.2.5.2.2.2.2.2.1) Figure 960. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32356bb69b6.svg.

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